Globally elevated excitation–inhibition ratio in children with autism spectrum disorder and below-average intelligence
Molecular Autism volume 13, Article number: 20 (2022)
Altered neuronal excitation–inhibition (E–I) balance is strongly implicated in ASD. However, it is not known whether the direction and degree of changes in the E–I ratio in individuals with ASD correlates with intellectual disability often associated with this developmental disorder. The spectral slope of the aperiodic 1/f activity reflects the E–I balance at the scale of large neuronal populations and may uncover its putative alternations in individuals with ASD with and without intellectual disability.
Herein, we used magnetoencephalography (MEG) to test whether the 1/f slope would differentiate ASD children with average and below–average (< 85) IQ. MEG was recorded at rest with eyes open/closed in 49 boys with ASD aged 6–15 years with IQ ranging from 54 to 128, and in 49 age-matched typically developing (TD) boys. The cortical source activity was estimated using the beamformer approach and individual brain models. We then extracted the 1/f slope by fitting a linear function to the log–log-scale power spectra in the high-frequency range.
The global 1/f slope averaged over all cortical sources demonstrated high rank-order stability between the two conditions. Consistent with previous research, it was steeper in the eyes-closed than in the eyes-open condition and flattened with age. Regardless of condition, children with ASD and below-average IQ had flatter slopes than either TD or ASD children with average or above-average IQ. These group differences could not be explained by differences in signal-to-noise ratio or periodic (alpha and beta) activity.
Further research is needed to find out whether the observed changes in E–I ratios are characteristic of children with below-average IQ of other diagnostic groups.
The atypically flattened spectral slope of aperiodic activity in children with ASD and below-average IQ suggests a shift of the global E–I balance toward hyper-excitation. The spectral slope can provide an accessible noninvasive biomarker of the E–I ratio for making objective judgments about treatment effectiveness in people with ASD and comorbid intellectual disability.
The hypothesis of an altered ratio between neural excitation and inhibition (E–I ratio) as a probable cause of autism was first introduced by Rubenstein and Merzenich in 2003  and received numerous confirmations in genetic and animal research . Indeed, the majority of the animal models of autism spectrum disorder (ASD) target functioning of the excitatory or inhibitory neurons and alter the balance of their activity [3, 4], while pharmacological drugs that correct this balance can help to rescue the disease phenotype, at least in experimental animals . Although Rubenstein and Merzenich initially related ASD to an elevated E–I ratio, later it became clear that some forms of ASD can be characterized by decreased E–I ratio [5, 6] and that alternations in the E–I ratio can be region-specific, reflecting homeostatic regulation of local E–I imbalances [7, 8]. Still, there is evidence that, in many cases, the global deficit associated with ASD can be characterized as predominant neuronal hyper- [9,10,11] or hypo [5, 6]-excitability. Therefore, despite simplification, the concept of a global E–I balance is important for understanding the pathophysiological mechanisms associated with ASD .
The genes that lead to the E–I imbalance through their effect on neurotransmission are often implicated in both ASD and intellectual disability [12,13,14]. People with ASD and comorbid intellectual disability are more likely to have epilepsy than autistic individuals without intellectual disability [15, 16], possibly because of more severe disturbances of the E–I balance. Although such patients may benefit most from targeted pharmacological treatment, neuroimaging studies looking for ‘autism biomarkers’ rarely include individuals from the lower end of the intelligence quotient (IQ) range .
Physiological parameters that quantify the degree and direction of the E–I imbalance in individuals with ASD—particularly in those with below-average IQ—could provide valuable biomarkers for translational research, stratifying patients for clinical trials, and making objective judgments about treatment efficacy .
Brain signals recorded with magnetoencephalography (MEG) directly reflect the activity of cortical neuronal populations and could potentially help to estimate the E–I balance globally as well as in distinct cortical regions. The power spectrum of electrophysiological signals measured with MEG or electroencephalography comprises the ‘periodic’ part that reflects rhythmic brain activity and the ‘aperiodic’ part—the ‘neural noise’ [18, 19]. The power of the aperiodic component falls off with increasing frequency following a power-law functional relationship, which is reflected in a linear relationship on a logarithmic scale. The slope of this linear function becomes flatter (less negative) during maturation [20,21,22,23,24,25], reflecting the increasing complexity of neural networks and/or changes in their structure and neurochemistry. At the same time, the spectral slope is sensitive to changes in excitatory and inhibitory neurotransmission during low arousal states, e.g., anesthesia and sleep (when the decrease in the E–I ratio is indexed by a steeper slope) [26,27,28,29,30] and may reflect E–I imbalance in neuropsychiatric disorders . It has been argued that the flattened spectral slope may reflect an elevated background rate of neurons’ firing, which is decoupled from an oscillatory carrier frequency and is driven by an increased E–I ratio (i.e., ‘noise’) [19, 27].
Although a spectrum of resting-state neural activity can be separated computationally into periodic and aperiodic components, the estimation of the aperiodic 1/f slope in the presence of oscillatory activity may vary depending on the method used, frequency bandwidth chosen, etc. [32, 33]. To overcome these obstacles, the 1/f spectral slope can be estimated in ~ 30–70 Hz range, where rhythmic activity is usually absent [27, 29, 32].
Here, we used MEG and individual magnetic resonance imaging (MRI)-based brain models to capture the spectral slope from high-frequency brain activity measured ‘at rest’ in children with ASD and below-average IQ, those with average IQ, and in age-matched TD children. There is strong evidence that brain structure and functioning, including the E–I balance, may be differently affected in males and females with ASD [34, 35]. The relatively small sample size in our neurophysiological study does not allow examining gender differences in E–I balance. Therefore, here we focused on boys, who are about 4 times more likely to be diagnosed with ASD than girls .
We predicted that boys with ASD and low IQ would yield flatter slopes of the aperiodic component of the power spectra in the high-frequency range (35–45 Hz) than the other two groups of boys, indicative of their globally disturbed (predominantly elevated) E–I ratios.
The participants were 49 boys with ‘non-syndromic’ ASD and 49 TD boys aged 6–15 years (see Additional file 1: Methods for recruitment and exclusion details). Each participant in the ASD group had a diagnosis of ASD confirmed by a child psychiatrist according to the DSM-5 criteria and interviews with children’s parents or caregivers. Parents/caregivers of all children were asked to fill in the Russian version of the Social Responsiveness Scale for children (SRS) .
IQ has been evaluated through standard scores on K-ABC subscales, as well as by calculating the Mental Processing Index (MPI) . MPI assessment requires minimal use of verbal content, and this index is well suited both for TD children and for participants with atypical cognitive functioning, such as ASD . The MPI includes four global scales: (1) the Sequential Processing scale, which assesses a child’s ability to arrange linearly or temporally related units of information in sequential or serial order, (2) the Simultaneous Processing scale, which involves abilities for holistic synthesis and integration of visual information, (3) the Learning scale, which evaluates a child’s ability to store and efficiently retrieve newly or previously learned information, (4) the Planning Scale, which focuses on Pattern Reasoning and Story Completion abilities. Scale scores are presented as age-adjusted standardized scores, normalized so that the mean is 100 and the standard deviation is 15, which is consistent with most cognitive assessment instruments. In the KABC-II, the term ‘average’ is used for MPI scores from 85 to 115, ‘above average’ for scores 116 to 130, ‘below average’ for scores 69 to 84, and ‘lower extreme’ for scores below 69. We used MPI scores to divide ASD participants into groups according to their cognitive abilities and to assess correlations with neurophysiological variables.
The study has been approved by the Ethical Committee of the Moscow State University of Psychology and Education. Verbal assent to participate in the experiment was obtained from all the subjects; parents/caregivers provided informed written consent.
For all the participants, the MEG data (see below) were available in the ‘eyes open’ (EO) condition, and for 45 TD and 38 ASD children the data were also available in the ‘eyes closed’ (EC) condition. The TD and ASD participants did not differ in age (Mann–Whitney U test, EO condition: NTD = 49, NASD = 49, U = 1014.5, Z = 1.31, p = 0.19; EC condition: NTD = 45, NASD = 38, U = 745.0, Z = 1.15, p = 0.25), but differed in the MPI scores (Mann–Whitney U test, p < 10–10 for both conditions). The SRS scores were significantly higher in participants with ASD than in the control sample (Mann–Whitney U test, p < 10–10 for both conditions).
The ASD participants were further subdivided into two groups based on their MPI IQ scores: average IQ (MPI > 85; ASD>85) and below-average IQ (MPI < 85; ASD<85). ASD children with IQ above 85 still had lower IQ than TD children (T test, p < 10–8 for subjects in both EO and EC conditions). The SRS scores were significantly higher in ASD than TD participants (T test, p < 10–10 for subjects in both EO and EC conditions, TD vs. ASD>85 and TD vs. ASD<85) and tended to be higher in ASD<85 group than in ASD>85 group (T test, EO: NASD>85 = 27, NASD<85 = 18, t(43) = 1.71, p = 0.09; EC: NASD>85 = 20, NASD<85 = 14, t(32) = 1.78, p = 0.08), but age did not differ in these three groups (Mann–Whitney U test, p’s > 0.3 for both conditions).
MRI data acquisition and processing
Structural magnetic resonance (MR) scans (voxel size 1 mm × 1 mm × 1 mm) were performed on a General Electric Signa 1.5 T scanner. The T1 images were processed using the default FreeSurfer (v. 6.0.0) ‘recon-all’ pipeline. For the MEG analysis, the cortical surface was parcellated into 448 similar-size labels, as described by Khan et al. .
MEG data acquisition and preprocessing
MEG was recorded with a 306-channel MEG system (Vectorview, Elekta-Neuromag). The ‘resting state’ recordings were always performed in the beginning of the recording session followed by experimental tasks analyzed elsewhere [41, 42]. The participants were instructed to sit calmly, first with eyes closed, and then, they were instructed to open their eyes. No other instructions were given. Two to four minutes of MEG were recorded in each experimental condition. Participants’ behavior was constantly monitored through a video camera positioned inside the MEG room. Trigger marks and experimenter’s comments were further used to select MEG intervals for analysis.
The signal was initially sampled at 1000 Hz with a 0.03–300 Hz band-pass filter. Head position was continuously monitored and corrected to each subject’s initial head position using MaxFilter software (v. 2.2). The temporal signal-space separation (tSSS) method  with correlation limit 0.9 was applied to compensate for correlated environmental noises.
Further steps of data preprocessing were performed with the MNE-python toolbox (v. 0.22.0) . The raw data were down-sampled to 500 Hz. The signal-space projections method  was applied to the raw data to suppress biological artifacts (eye blinks and cardiac artifacts). The raw signal was subdivided into 1 s non-overlapping epochs. Epochs contaminated with bursts of myogenic artifacts were automatically detected using MNE-python function ‘annotate_muscle_zscore’ with default parameters (ch_type = ‘mag,’ threshold = 5.0, min_length_good = 0.2, filter_freq = [110, 140]) and excluded from analysis. From this point on, only gradiometers were used for analysis. Those epochs where the head origin deviated from the initial position by more than 20 mm were excluded from analysis. The percent of dropped epochs was higher in the ASD than in TD children in the EO condition (Mann–Whitney U = 940.0, p = 0.03) and tended to be higher in the EC condition (Mann–Whitney U = 733.0, p = 0.10). To preclude group differences in timing of the analyzed epochs relative to the condition onset, we randomly excluded 10% of the ‘good’ epochs in the TD group and then have chosen the first 60 epochs per condition and subject in both ASD and TD groups for further analysis. As a result, there was no significant difference in epoch times relative to the condition onset time between the three experimental groups for both EO (Kruskal–Wallis one-way analysis of variance (ANOVA), H(2, N = 98) = 2.73, p = 0.25) or EC (Kruskal–Wallis one-way ANOVA, H(2, N = 83) = 2.38, p = 0.30) conditions. The mean distance of the head origin from the initial position did not differ between the groups (Kruskal–Wallis one-way ANOVA: EO, H(2, N = 98) = 2.58, p = 0.27, mean distance in TD/ASD>85/ASD<85 was 4.1/4.8/5.3 mm; EC, H(2, N = 83) = 0.58, p = 0.75, mean distance in TD/ASD>85/ASD<85 was 2.5/2.8/2.6 mm).
Empty room recording
To estimate background noise, MEG data were recorded in the absence of a subject (empty room), directly before each subject’s MEG recording. The empty room MEG recordings were spatially filtered using the tSSS method  and were further used to estimate the background noise in the frequency range of interest, as well as to construct the noise covariance for the standardized low-resolution brain electric tomography (sLoreta) analysis , as described below.
Choice of the frequency range for the spectral slope estimation
Following previous studies [27, 29, 32], we sought to estimate the slope of aperiodic activity at the high-frequency part of the spectrum. To choose the optimal high-frequency range for the aperiodic slope analysis, we first estimated the power spectral density (PSD) in the sensor space using Welch’s method. Figure 1 shows an averaged over all participants power spectrum of a centrally located gradiometer (‘total power’) and the grand averaged power spectrum of the signal recorded by this gradiometer in the empty room.
The overall ‘total power’ spectrum is characterized by presence of peaks corresponding to the typical neuro-oscillation bands (alpha, beta). For frequencies above approximately 35 Hz, peaks are not obvious and the 1/f-like trend is apparent. We therefore set the lower bound for our aperiodic activity slope estimate to 35 Hz. On the other hand, a knee appears in the spectrum for frequencies above approximately 50 Hz where the ‘total power’ approaches that of the empty room spectrum (i.e., where power is approximately constant as a function of frequency). In order to also avoid potential effects of the 50 Hz power line cycle and the notch filter used for its removal, we set the upper bound for our aperiodic activity slope estimate to 45 Hz. In the 35–45 Hz range, the grand averaged over all subjects in EO condition spectrum displays a clear 1/f-like characteristic (i.e., it is well approximated by a line on the log–log scale; Fig. 1).
Estimation of the spectral slope in the source space
We performed source localization analysis using linearly constrained minimum variance (LCMV) beamformer spatial filters  that significantly reduce the contribution of biological artifacts (e.g., myogenic activity) into the brain activity estimated at the source level . In order to gauge the effect of residual myogenic contamination on the group differences in spectral slope, we also compared the LCMV results with those obtained using sLoreta . In contrast to beamforming methods, the methods based on the least-squares minimum norm algorithms such as sLoreta tend to overfit non-brain signals . Therefore, the contribution of myogenic artifacts to the activity estimated at cortical sources using sLoreta is expected to be greater than in the case of LCMV beamformer (see Additional file 1: Results: ‘Contribution of myogenic artifacts to the group differences in spectral slope’).
MEG data were co-registered with individual’s MR image of the head, and the forward model was created using a one-layer boundary element model (BEM) and surface-based source space (4096 vertices per hemisphere). The raw data were filtered between 30 and 140 Hz, and the data covariance matrix was estimated individually for each condition. The LCMV beamformer filter with a regularization parameter of 0.1 was calculated for the source orientation that maximizes power. The same filter was applied to each 1 s data epoch. We then calculated the neural activity index (NAI) that represents the signal normalized to the spatially inhomogeneous noise . In each source vertex, the spectral power was estimated using Welch’s method. The power spectra at each vertex were normalized by the maximum value at the corresponding spectra and then averaged within each of 448 labels. For each label, we then fitted a linear regression line to the logarithm of the power spectrum between 35 and 45 Hz vs. the logarithm of the frequency (‘polyfit’ function, Python library ‘NumPy,’ v. 1.20.2). The linear term coefficient was used as an estimate of the 35–45 Hz spectral slope (hereinafter referred to as the ‘spectral slope’).
We also estimated the aperiodic slope in the 2–45 Hz range using the ‘FOOOF’ parameterization algorithm . A detailed description and discussion of these results are given in Additional file 1: Results (‘Spectral slope estimated with FOOOF’).
Estimation of the periodic power in the alpha and beta frequency ranges
While beamformers provide good estimates of spectral power changes (e.g., when contrasting conditions) , they might provide suboptimal estimates of the absolute power. Therefore, to quantify the periodic spectral power, we performed source localization with sLoreta that has zero localization error . For this analysis, MEG and empty room signals were band-passed in the 1–47 Hz range. The noise covariance matrix was derived from one minute of ‘MaxFiltered’ empty room data. The sLoreta inverse solution was estimated with the following parameters: semi-orthogonal orientation of the dipole source to the cortical surface (parameter loose set to 0.4), depth weighting parameter set to 0.8, and signal-to-noise ratio (SNR) set to 1. The inverse operator was applied to each one-second data epoch, and the power spectra were obtained at the source level using Welch’s method. To separate the periodic from aperiodic spectral power in the alpha and beta bands, we applied the FOOOF algorithm  to the average power spectra of each label in the 2–45 Hz range. The periodic component was then estimated as: [original spectra—aperiodic fit]. The mean alpha and beta powers were assessed as an average spectral power of the periodic component in the 7–13 Hz and 14–25 Hz bands, respectively. This approach gives a reasonable approximation on the power of periodic component in alpha and beta ranges (see ‘Results’ section).
Estimation of the sensitivity maps
To ensure that our results were not biased by head size, we calculated individual ‘sensitivity maps’ (‘mne.sensitivity_map’ function in MNE-python), which estimate how well each source is sampled by a sensor array (i.e., the planar gradiometers). The mean sensitivity in a label was then used as a nuisance variable in our regression analysis.
To estimate the rank-order stability of the spectral slopes, we calculated intraclass correlation coefficients (ICC) between conditions (EO/EC). ICC was estimated for a fixed set of ‘raters’ (EO, EC) and for the average of all ‘ratings’ (mean spectral slopes) .
The mean periodic alpha and beta spectral power values were log10-transformed to normalize the distributions. Because distributions of the analyzed variables (log10-transformed alpha and beta power, mean slope) did not significantly differ from normal in either EO or EC conditions (Shapiro–Wilk test, all p’s > 0.25), to test for the group differences we used parametric analysis of covariance (ANCOVA) with age as the covariate.
We calculated Spearman correlation coefficients to estimate the relationship between spectral slope and IQ, SRS, and age, because we expected a monotonic, but not necessarily strictly linear relationships. To control for nuisance variables (background noise, sensitivity, spectral power, age), we calculated partial Spearman correlations.
The Benjamini–Yekutieli false discovery rate (FDR) correction for multiple comparisons was applied to the p values when tests were calculated for multiple cortical labels. The threshold 0.05 was applied to both the univariate and FDR-adjusted p values.
State dependency and rank-order stability of the spectral slope
To become a clinically useful signature of E–I balance, the spectral slope must not only be sensitive to changes in the neural E–I ratio, but also reflect trait-like individual differences that remain stable across different functional states. In awake humans, the E–I balance is shifted toward higher inhibition during states associated with high alpha power [53,54,55]. We therefore expected that if the spectral slope in children with and without ASD is sensitive to changes in the E–I ratio, then it would be steeper (more negative) in the EC condition (characterized by stronger alpha activity), as compared with the EO condition. We also proposed that if the spectral slope represents a stable individual characteristic, it should have high rank-order stability between the EO and EC conditions.
Figure 2A, B shows the cortical distribution of the spectral slopes in the three groups of children. Using ICC, we estimated the rank-order stability of the spectral slopes of the separate cortical regions (448 labels) between the EC and EO conditions. We also estimated the rank-order stability of the spectral slope averaged over all cortical labels (hereafter, the mean slope). The rank-order stability of the mean slope was good (ICC(82) = 0.87, p < 0.000001)  and exceeded that in the individual cortical labels, where it ranged from 0.06 to 0.79 (Fig. 2C). Considering the highest rank-order stability of the mean spectral slope, we used this measure for further analysis.
A paired t test revealed a highly significant and strong decrease in the mean slope from the EO to EC condition in the combined group of subjects (T(82) = 5.81, p < 0.000001, Cohen d = 0.64), as well as in the separate groups (TD: T(44) = 3.67, p = 0.0006, Cohen d = 0.55; ASD>85: T(22) = 3.38, p = 0.0003, Cohen d = 0.71; ASD<85: T(14) = 3.31, p = 0.005, Cohen d = 0.85; Fig. 2D).
Effect of age, condition, IQ, and autism diagnosis on the mean spectral slope
The mean spectral slope values for the three groups of participants and the two experimental conditions are shown in Fig. 3A. The general linear model analysis with factors Group, Condition, and Age revealed a main effect of Age (F(1,79) = 12.76, p = 0.0006, η2 = 0.14) indicating a general flattening of the spectral slope with brain maturation (Fig. 3B). The highly significant main effect of Condition (F(2,79) = 38.3, p < 1e−10, η2 = 0.33) did not interact with Group (Condition × Group: F(2,79) = 2.4, p = 0.1, η2 = 0.06) or Age (Condition × Age: F(2,79) = 2.6, p = 0.1, η2 = 0.03), thus suggesting that the strong changes in spectral slope associated with opening/closing the eyes are comparable across age and in groups from different diagnostic categories. As expected, we found a significant main effect of Group (F(2,79) = 6.95, p = 0.0017, η2 = 0.15): The slope was flatter in the ASD<85 than in either TD (F(1,79) = 7.2, p = 0.009) or ASD>85 (F(1,79) = 13.8, p = 0.0004) groups. Unexpectedly and by contrast, though, the slope for the ASD>85 group tended to be steeper than that in the TD group (F(1,79) = 2.80, p = 0.098).
We repeated the analysis with factors Group and Age for the EO condition for which the data were available for a greater number of participants. Again, there was a significant effect of Age (F(1,94) = 18.1, p = 0.00005, η2 = 0.16) and Group (F(2,94) = 8.4, p = 0.00045, η2 = 0.15), which was explained by a flatter slope in the ASD<85 group than in the rest of participants.
To test whether there is a link between IQ and the mean spectral slope in TD children, and whether it differs from that in children with ASD, we calculated correlations between the spectral slope and IQ in the TD and combined ASD groups. The ASD vs. TD difference in partial Spearman correlation coefficients (when adjusting for age) was significant for the EO condition (NTD = 49, NASD = 49, Z = 1.67, p = 0.047), and the same tendency was observed for the EC condition (NTD = 45, NASD = 38, Z = 1.41, p = 0.079). While children with ASD demonstrated reliable negative correlations between the mean slope coefficient and IQ, no such correlations were found in the TD group (Fig. 3C).
We also tested for the correlation between the mean slope and SRS scores in the ASD groups. In children with ASD, there was a tendency for correlation between MPI IQ and SRS scores: N = 45, Spearman R = − 0.28, p = − 0.06). However, the correlations between the mean slope and SRS scores were not significant (EO: NASD = 45, R = 0.14, p = 0.34; EC: NASD = 34, R = 0.29, p = 0.1).
Cortical distribution of the correlations between spectral slope and IQ in children with ASD
To ensure that the link between the mean spectral slope and IQ is not driven by brain regions wherein source estimates are most susceptible to myogenic contamination, we calculated partial Spearman correlation coefficients between MPI IQ and spectral slopes in the separate cortical labels, while controlling for age and sensitivity (Fig. 4A; see Methods for details). For the EO condition, the largest group of significant correlations (p < 0.05, FDR corrected) overlapped the supramarginal area and temporoparietal junction of the right hemisphere (Fig. 4B, see Additional file 1: Table S2 for the full list of the cortical labels that survived the FDR correction). In general, the spatial distribution of the correlations is evidence against a potential ‘myogenic explanation’ of their origin. Similar negative correlations were observed for the EC condition (Fig. 4A), but none of them survived correction for multiple comparisons (Fig. 4B).
Spectral slope and periodic activity in the alpha and beta range
It has been argued that changes in the spectral slope of brain activity are secondary to the changes in periodic activity (e.g., power of alpha or beta rhythms) . The power of periodic activity varies with functional and behavioral state, which in turn may depend on a subject’s diagnosis and IQ. To ensure that the group differences in the spectral slope were not explained by differences in the periodic activity, we estimated the periodic spectral power in the alpha and beta bands.
Figure 5 shows cortical distributions of alpha and beta periodic power in the three groups of participants. In accord with the results of Muthukumaraswamy and colleagues , a stronger periodic alpha and beta power was associated with a steeper, more negative spectral slope in both TD and ASD participants and in both experimental conditions (Table 2). However, unlike the slope, the grand averaged periodic power did not differ between the groups (ANOVA Group effect for the alpha band, EO: F(2,94) = 1.89, p = 0.16, η2 = 0.038; EC: F(2,80) = 1.29, p = 0.28, η2 = 0.031; ANOVA Group effect for the beta band, EO: F(2,94) = 1.4, p = 0.26, η2 = 0.028; EC: F(2,80) = 2.1, p = 0.13, η2 = 0.049).
To further ensure that the link between spectral slope and IQ in the ASD group did not stem from inter-individual differences in periodic activity, we calculated partial Spearman correlations between the mean spectral slope and IQ while controlling for the mean alpha and beta power. Partialling out the periodic power did not significantly affect the correlation between the mean spectral slope and MPI IQ in children with ASD (EO: N = 49, Rpartial = − 0.43, p = 0.003; EC: N = 38, Rpartial = − 0.35, p = 0.04).
The power of electrophysiological brain activity exhibits a 1/f-like dependence, and the flattened slope of the power decay as a function of frequency has been previously linked to a shift in the neural E–I balance toward excitation [26,27,28,29,30]. Here, we found that the spectral slope (averaged over cortical regions) was flatter in children with ASD and below-average IQ than in either TD children or in those with ASD and average IQ (Fig. 3A). This finding suggests that the neuronal E–I balance in the brains of the below-average IQ children with non-syndromic ASD is shifted toward excitation at the global scale.
Since the balanced activity of excitatory and inhibitory neurons is necessary for normal development and functioning of the brain [57,58,59], changes of the E–I ratio may contribute to intellectual disability in ASD. Indeed, mutations in the genes important for neural communication and the E–I balance may lead to both autism and intellectual disability [12,13,14, 60, 61]. Moreover, the putative shift to neuronal hyper-excitability observed in children with below-average IQ in our study may explain the high prevalence of epilepsy at the low-IQ end of the autism spectrum [15, 16].
The correlation of the spectral slope with IQ characterized children with ASD, but not TD children (Fig. 3C). It is noteworthy that in the ASD group these correlations formed a large right-hemispheric cluster (Fig. 4), which included the temporoparietal junction and supramarginal gyrus areas previously implicated in the theory of mind [62, 63] and empathy , respectively. Functional abnormalities in these areas were frequently found in ASD in functional MRI studies [65,66,67,68]. Moreover, the whole set of regions where the flattened spectral slope is linked to poor performance IQ (Additional file 1: Table S3) essentially overlaps with the frontoparietal executive network, whose abnormality is critically involved in executive dysfunction and the profound decrease in adaptive functioning in ASD (for a meta-analysis of functional MRI findings see ). The spatial information in the present study, however, should be interpreted with caution given the unequal sensitivity of the MEG sensors to the activity of different cortical sources and the moderate intraclass correlations of the region-specific spectral slopes between experimental conditions (Fig. 2C).
No significant differences in the spectral slope were found between children with ASD and average IQ and those with typical development. Interestingly, children with ASD and IQ above 85 display a tendency to have a steeper mean spectral slope than the TD children. It is likely that in the less severely affected children with ASD, the E–I imbalances are compensated on the global scale (or even biased toward inhibition) due to homeostatic plasticity mechanisms .
In contrast to MPI IQ, SRS scores in children with ASD did not correlate significantly with mean spectral slope. Perhaps the global increase in the E–I ratio primarily affects general cognitive abilities, whereas social deficits may be caused by local E–I imbalances in key systems involved in social cognition.
Although the mean spectral slope statistically significantly differentiated children with ASD and intellectual disability from the rest of the sample, these children share some properties of 1/f slope that are also pertinent to both average-IQ children with ASD and their TD peers.
Firstly, the mean spectral slope becomes less negative with age in all groups of participants (Fig. 3B). The developmental flattening of the spectral slope has been previously observed in TD infants , children [20, 21], and adolescents  and may reflect protracted maturational changes that are common for both TD and ASD individuals. These maturational changes do not necessarily reflect changes in neural E–I balance, since the 1/f slope is sensitive to a multitude of processes  that include not only developmental changes in the number and composition of gamma-aminobutyric acid (GABA) and glutamatergic receptors [70, 71], but also axon myelination  and changes in cortical thickness . Considering the strong age dependence of the spectral slope, age should be carefully controlled for in studies employing the slope as a potential biomarker of the E–I balance.
Secondly, in both TD and ASD the spectral slope was steeper in case of stronger alpha and beta oscillations (Table 2) and generally steeper during the EC condition associated with high power in the alpha rhythm (Fig. 2D). These findings are in line with a previous report  and may stem from a partial overlap in the inhibitory mechanisms affecting alpha oscillations and the spectral slope. Indeed, ‘alpha states’ index reduced cortical excitability [53, 54] and are dominated by currents and firing in supragranular cortical layers , which display steeper 1/f slope than the other cortical layers, presumably due to longer time constants and a higher density of inhibitory transmembrane currents . Therefore, inhibitory currents in the supragranular layers may both promote alpha oscillations and enhance the 1/f power decay. However, partialling out the variability in periodic power did not change the negative correlation of the spectral slope with IQ in ASD. This finding clearly indicates that the spectral slope brings unique information that is different from that which can be derived exclusively from the periodic activity.
Importantly, the correlations of the spectral slope with IQ in our study are unlikely to be explained by differences in biological or instrumental noise (see Additional file 1: Results for an analysis of the contribution of instrumental noise and muscle artifacts to the spectral slope and power in the 35–45 Hz range). Therefore, the link between IQ and the slope of the aperiodic component of the MEG-detected neural activity spectrum in children with ASD seems to be a true finding that reflects a globally elevated E–I ratio associated with intellectual disability that often co-occurs with autism.
It is important to note that the spectral slope is a relational measure and its absolute value is not particularly informative, since it depends on age and the method used to record neural activity (MEG, EEG, local field potential) , differs in different cortical areas , and—in case of EEG—depends on reference electrode . Thus, a subject's spectral slope can provide information about neural E–I balance only when it is viewed in relation to the equivalent values in a normative sample.
Another important question is how the choice of the frequency range affects the spectral slope. With a rare exception , recent studies that used FOOOF  have estimated the aperiodic part of the spectrum in one broad frequency range, most often from delta to gamma frequency (~ 1–45 Hz) [20,21,22,23,24,25, 78,79,80,81,82,83]. Theoretically, aperiodic part of the spectrum is self-similar, or fractal, across a wide range of frequencies, such that the estimation of the spectral slope should be independent of the chosen fitting range [50, 84, 85]. In practice, however, the spectral slope may depend on the frequency range used . In particular, FOOOF assumes all oscillation peaks lying within the fitting range because it does not fit partial Gaussian peaks. The delta activity is elevated in many developmental and psychiatric disorders [86,87,88], but detection of the delta peak can be difficult, which may lead to unrealistically negative slopes in subjects with elevated delta power . To avoid this problem, in the present study we assessed the spectral slope in the high-frequency range, in which there are no spectral peaks. In the future, it would be important to investigate how the choice of frequency range affects estimation of the spectral slope.
Given the high cost of MEG, a question arises as to whether the spectral slope can be reliably estimated using a more affordable method, EEG. Bearing in mind the strong contamination of EEG by myogenic artifacts [89,90,91], and the likely differences in muscle tone between healthy controls and patients from clinical groups, caution should be exercised here. The spatial distribution of high-frequency EEG activity, spectral slopes, and their group differences may provide insight into the likely contribution of muscle artifacts to the experimental results. Perhaps spectral slopes can be most reliably estimated from EEG sensors located away from the cranial muscles (especially when using a bipolar reference or an averaged reference from a large number of EEG electrodes). Another way to reduce myogenic contamination in the EEG is by using source localization. As with MEG (Additional file 1: results; Additional file 1: Fig. S2), EEG source localization with beamformer techniques can potentially reduce the contribution of muscle artifacts to source activity in frontal, temporal, and occipital cortical areas.
An important limitation of our study is the high heterogeneity of our ‘idiopathic’ ASD sample that included subjects with different etiologies of ASD. To confirm the validity of the spectral slope biomarker, it would be important to investigate participants with monogenic disorders and animal models that are characterized by predominant shifts of the E–I balance toward excitation [9,10,11] or inhibition [5, 6, 78]. Another caveat is that putative abnormalities of the E–I ratio inferred here by the 1/f slope may not be specific to autism, but rather play a general role in the pathophysiology of intellectual disability. Future research should explore this question. It is also important to note that our study included a relatively small number of subjects, and they were all boys. Since the E–I balance may be differently affected in males and females with ASD , the possibility of generalizing our results to girls requires additional research.
There are also a few potential improvements that could increase the reliability of measurement of the 1/f spectral slope and promote its practical application. Firstly, while our participants were not engaged in any specific activity, one should consider using a modified experimental paradigm that allows for longer periods of artifact free data in children . Secondly, the accuracy of the slope estimation could be improved by increasing the upper limit of the frequency range beyond 45 Hz, e.g., when the power line cycle is 60 Hz and/or a better SNR is available. Thirdly, the new and rapidly developing technology of ‘on-scalp’ MEG [93,94,95] may help to obtain equally high-quality data in all parts of the head, including the frontal areas, which are typically positioned furthest away from the sensors in ‘conventional’ MEG systems.
In conclusion, the abnormally flattened 1/f spectral slope estimated in the high-frequency part of the MEG-detected neural activity spectrum is likely to reflect neuronal E–I imbalance associated with intellectual disability in children with ASD. Participants with below-average IQ are heavily underrepresented in autism research  and most neuroimaging studies only include high-functioning individuals with ASD . Our MEG study demonstrates that it is feasible to collect resting-state MEG and structural MRI data in children with below-average IQ, and that cognitive ability, even though it is not a core aspect of the ASD diagnosis per se, should be considered as an important factor for research in the pathophysiology of this neurodevelopmental disorder. Our results indicate that the 1/f spectral slope estimated in the high-frequency part of the neural activity power spectrum may be a useful and objective biomarker of changes to the E–I ratio induced by pharmacological and other therapeutic interventions in low-functioning children with ASD.
Availability of data and materials
The datasets used and/or analyzed during the current study are available from the corresponding author on reasonable request.
Analysis of variance
Analysis of covariance
Autism spectrum disorder
- ASD>85 :
Children with autism spectrum disorder and Mental Processing Index above 85
- ASD<85 :
Children with autism spectrum disorder and Mental Processing Index below 85
False discovery rate
Intraclass correlation coefficients
Linearly constrained minimum variance
Mental Processing Index
Magnetic resonance imaging
Power spectral density
Standardized low-resolution brain electric tomography
Social Responsiveness Scale
Temporal signal-space separation
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We would like to thank children and their families for participation in this study.
This study was supported by Russian Science Foundation (project # 22-25-00419).
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Manyukhina, V.O., Prokofyev, A.O., Galuta, I.A. et al. Globally elevated excitation–inhibition ratio in children with autism spectrum disorder and below-average intelligence. Molecular Autism 13, 20 (2022). https://doi.org/10.1186/s13229-022-00498-2