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Table 4 Top 20 Non-TD-associated differentially expressed genes by log2(fold change) in meta-analysis

From: A meta-analysis of two high-risk prospective cohort studies reveals autism-specific transcriptional changes to chromatin, autoimmune, and environmental response genes in umbilical cord blood

Probe ID Gene symbol MARBLES EARLI Meta-analysis
log2(FC) p value log2(FC) p value log2(FC) SE p value q value
16761521 TAS2R46 0.43 6.7E−03 0.29 9.3E−02 0.37 0.12 1.7E−03 0.78
16846019 FAM215A 0.08 4.5E−01 0.32 9.5E−04 0.22 0.07 2.5E−03 0.85
17063807 TRBV11-2 0.30 9.4E−04 0.14 9.3E−02 0.21 0.06 4.5E−04 0.74
17094496 MIR1299 0.17 7.7E−02 0.22 2.1E−02 0.20 0.07 3.8E−03 0.91
16842217 SNORD3D 0.13 7.0E−02 0.25 2.9E−03 0.18 0.05 8.3E−04 0.74
16818580 RNA5SP415 0.16 6.8E−02 0.20 5.1E−02 0.18 0.07 7.9E−03 0.91
16846016 LRRC37A2 0.09 3.5E−01 0.24 6.4E−03 0.17 0.06 7.6E−03 0.91
16902656 RNA5SP103 0.22 3.0E−03 0.06 5.2E−01 0.16 0.06 5.5E−03 0.91
16975969 RNU6-310P 0.20 1.6E−03 0.08 2.5E−01 0.15 0.05 1.6E−03 0.78
16845957 LRRC37A4P 0.21 9.3E−03 0.11 1.1E−01 0.15 0.05 3.8E−03 0.91
16788576 SNORD113-3 0.14 1.1E−02 0.15 7.2E−03 0.14 0.04 2.0E−04 0.74
16840210 SLC52A1 0.19 3.4E−05 0.08 8.6E−02 0.14 0.03 1.7E−05 0.34
16774442 SMIM2-AS1 0.14 1.6E−03 0.14 4.8E−03 0.14 0.03 1.9E−05 0.34
16985844 PMCHL2 0.11 2.9E−02 0.17 1.4E−02 0.14 0.04 1.3E−03 0.74
16805216 ASB9P1 − 0.15 1.6E−02 − 0.13 3.6E−02 − 0.14 0.04 1.4E−03 0.74
17078751 REXO1L1P − 0.14 2.3E−03 − 0.12 1.0E−01 − 0.14 0.04 5.2E−04 0.74
16728518 FAM86C1 − 0.21 6.6E−03 − 0.08 3.1E−01 − 0.15 0.06 7.8E−03 0.91
17061129 RASA4 − 0.20 6.3E−03 − 0.09 2.7E−01 − 0.16 0.06 5.0E−03 0.91
16836858 RNU6-446P − 0.26 3.2E−03 − 0.06 5.7E−01 − 0.18 0.07 7.1E−03 0.91
16733848 RP11-326C3.7 − 0.07 4.4E−01 − 0.33 9.6E−04 − 0.20 0.07 3.8E−03 0.91
  1. Non-TD non-typically developing, FC fold change, SE standard error