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Table 2 Full gene list by category

From: Genes with high penetrance for syndromic and non-syndromic autism typically function within the nucleus and regulate gene expression

ID with highly comorbid autism (HCA) N = 71 ID with variable autism (VarAut) N = 124 ID with highly comorbid epilepsy (HCE) N = 86 ID with variable epilepsy (VarEp) N = 78 ID without autism or epilepsy (ID only) N = 75
ADNP ACSL4 AASS ADAR AAAS
ADSL ACY1 ACTB ADCK3 ADAT3
ANKRD11 ADGRG1 ACTG1 ALDH3A2 AHDC1
ARID1B AFF2 ADK AP4B1 AIFM1
ARX AHI1 AGA AP4E1 ALX4
ATRX ALDH5A1 ALDH18A1 AP4S1 AP1S1
AUTS2 ALDH7A1 ALDH4A1 ARID1A AP4M1
BCKDK AP1S2 ALG13 ATIC ARSE
BRAF ARHGEF6 ALG6 BSCL2 B4GALT1
C12orf57 ASL ARG1 CACNG2 B4GALT7
CC2D1A BBS10 ARHGEF9 CDK5RAP2 BBS7
CHD2 BCKDHA ASPM CENPJ BRWD3
CHD7 BCKDHB ASXL1 CHMP1A C12orf65
DEAF1 BTD ATP1A2 COG8 C5orf42
DHCR7 CACNA1D ATP1A3 COL4A2 CA8
DMPK CAMTA1 ATP6V0A2 CSPP1 CASC5
EHMT1 CASK ATR CYP27A1 CDH15
FMR1 CBS CCDC88C DCAF17 CEP152
FOLR1 CC2D2A CLN5 DHTKD1 CLCNKB
FOXG1 CDKL5 CLN8 DIP2B COG1
FOXP1 CDON CLP1 DNMT3A COG6
GAMT CEP290 CTSA EIF2AK3 CRADD
GATM CEP41 CUL4B ESCO2 CRBN
GRIA3 CHKB D2HGDH FAT4 CTDP1
HCN1 CNTNAP2 DHCR24 FGF14 DDHD2
HDAC8 COG5 DHFR FGFR1 DDX59
HERC2 CREBBP DPM1 GALE DLAT
HOXA1 CTCF EFTUD2 GALT EMD
IQSEC2 CTNNB1 ELOVL4 GATAD2B ENTPD1
KIAA2022 DAG1 EPG5 GJC2 FGFR3
KRAS DBT ERLIN2 GRIN1 FTCD
MAGEL2 DCHS1 FAM126A HFE GIF
MAOA DCX FBXL4 IGF1 GMPPA
MAP2K1 DDC GABRA1 KAT6B GNPTAB
MBD5 DEPDC5 GMPPB KIAA1279 HPRT1
MECP2 DLG3 GRM1 KRAS IDUA
MED12 DMD KANSL1 LBR IGBP1
MLL DOCK8 KCNQ2 LINS1 INPP5E
MPLKIP DPYD KCNT1 MANBA IRX5
NDP DPYS KCTD7 MTRR KCNK9
NFIX DYM KIF5C MYCN KIF5A
NIPBL DYNC1H1 KPTN NIN LARGE
NRXN1 DYRK1A MGAT2 NTRK1 LARP7
OCRL EP300 MLYCD OFD1 MAN2B1
PCDH19 FGFR2 MTR PEPD MED23
POMGNT1 FH NAGA PEX1 MIR17HG
PQBP1 FTSJ1 NDE1 PIGO NRAS
RAB39B GABRB3 NSDHL PORCN PACS1
RAD21 GDI1 OCLN PPOX PDE4D
RAI1 GLYCTK PAK3 PTCH1 PEX11B
SATB2 GNS PDHA1 PVRL1 PEX6
SCN1A GRIK2 PDX1 PYCR1 POLR3B
SETD5 GRIN2A PGAP2 RAB23 POMT2
SGSH GRIN2B PGAP3 RAB3GAP1 PRKAR1A
SHANK3 GSS PHGDH RAB3GAP2 PTDSS1
SLC6A8 HCFC1 PIGA RBBP8 RIT1
SLC9A6 HDAC4 PIGL SAMHD1 SKI
SMAD4 HEPACAM PIK3R2 SERAC1 SLC4A4
SMARCA2 HGSNAT PLP1 SIL1 SOS1
SMC1A HPD PNKP SIX3 SPTBN2
SMC3 HRAS PPT1 SLC12A6 TAF2
STXBP1 HUWE1 QARS SMARCA4 TBX1
SYNGAP1 IL1RAPL1 RAB18 SMARCB1 TECR
TBC1D20 KANK1 RANBP2 SOBP THOC6
TCF4 KCNH1 RNASET2 SOX3 TMCO1
TSC2 KCNJ10 RTTN SRD5A3 TMEM237
UBE3A KDM5C SEPSECS ST3GAL3 TMEM67
UPF3B KDM6A SLC19A3 STIL TTI2
VPS13B KIAA0196 SLC2A1 SYP UMPS
ZEB2 KIF7 SMS TAT UQCRQ
ZMYND11 KIRREL3 SNIP1 TBC1D7 WDR81
KMT2D SPTAN1 TMEM216 XYLT1
L1CAM ST3GAL5 TRAPPC9 YAP1
L2HGDH SZT2 UBE3B ZBTB16
LAMB1 TBCE UBR1 ZBTB24
MAN1B1 TECPR2 VLDLR
MCPH1 TRMT10A ZDHHC9
MEF2C TUBA8 ZIC2
METTL23 TUBB2A
MKKS TUBB3
MTHFR UBE2A
NAGLU VPS53
NDN WDR45
NR2F1 WDR62
NSD1 WWOX
NSUN2 ZSWIM6
OPHN1
PAH
PAX6
PGM3
PHF6
PHF8
PIGV
POMT1
PRSS12
PTEN
PTPN11
RELN
ROGDI
RPGRIP1L
RPS6KA3
SCN2A
SCN8A
SETBP1
SHH
SLC16A2
SLC17A5
SLC35C1
SOX10
SOX11
SRCAP
STAMBP
TCN2
TCTN3
TSC1
TSPAN7
TUBA1A
TUBG1
TUSC3
UPB1
USP9X
ZBTB20
ZNF711
ZNF81