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Table 2 Top five SNPs from tier 2 analysis: all chromosome X SNPs

From: The female protective effect in autism spectrum disorder is not mediated by a single genetic locus

  AGRE discovery (208 cases, 151 controls) SSC replication (207 cases, 676 controls)
SNP Allele 1/allele 2 Affected allele 1 frequency (%) Unaffected allele 1 frequency (%) Odds ratio P value Corrected P value Affected allele 1 frequency (%) Unaffected allele 1 frequency (%) Odds ratio P value
Predicted . 97.0 <24.3 >88 ≤1×10−8 ≤0.05 97.0 <24.3 >88 ≤1×10−8
rs2429799 A/G 21.2 7.3 2.90 0.0003 1.0 . . . .
rs5932245 A/G 97.1 87.4 1.11 0.0004 1.0 54.1 55.0 0.98 0.9645
rs878252 G/A 31.7 15.9 2.00 0.0006 1.0 29.0 25.6 1.13 0.1699
rs5928065 G/A 94.7 84.1 1.13 0.0008 1.0 88.4 93.3 0.95 0.5674
rs7063248 G/A 73.4 57.6 1.27 0.0017 1.0 97.1 96.6 1.01 0.1885