Table 1 Differentially expressed genes overlapping upregulated L1s in specific samples
From: Exploratory analysis of L1 retrotransposons expression in autism
L1 chr | L1 start | L1 end | L1 ID | Gene name | Gene alteration | Sample ID |
|---|---|---|---|---|---|---|
chr11 | 14799221 | 14805319 | L1PA5:L1:LINE | PDE3B | Upregulated | SRR9292614 |
chr1 | 68553278 | 68559388 | L1PA6:L1:LINE | WLS | Upregulated | SRR9292620 |
chr11 | 14799221 | 14805319 | L1PA5:L1:LINE | PDE3B | Upregulated | SRR9292620 |
chr11 | 132190054 | 132196077 | L1PA4:L1:LINE | NTM | Upregulated | SRR9292620 |
chr5 | 139895099 | 139900527 | L1PA3:L1:LINE | ANKHD1-EIF4EBP3 | Upregulated | SRR9292620 |
chr1 | 220814954 | 220821404 | L1PA10:L1:LINE | MARK1 | Downregulated | SRR9292620 |
chr10 | 49580263 | 49585413 | L1PA7:L1:LINE | MAPK8 | Downregulated | SRR9292620 |
chr11 | 132626675 | 132633167 | L1PA7:L1:LINE | OPCML | Downregulated | SRR9292620 |
chr18 | 3695243 | 3700586 | L1PA7:L1:LINE | DLGAP1 | Downregulated | SRR9292620 |
chr19 | 40543822 | 40549961 | L1PA4:L1:LINE | ZNF780B | Downregulated | SRR9292620 |
chr5 | 139895099 | 139900527 | L1PA3:L1:LINE | ANKHD1-EIF4EBP3 | Upregulated | SRR9292621 |