Table 3 Novel GWS loci from combined ASD-schizophrenia GWAS

rs57709857

chr8:38014429..38316849

A

0.92 (0.86–0.97)

0.93 (0.91–0.96)

0.93 (0.91–0.95)

4.2 × 10⁻⁹

BAG4 DDHD2 FGFR1 LETM2 LSM1 PLPP5 WHSC1L1

rs1353545

chr3:60276185..60305117

C

1.05 (1.00–1.10)

1.06 (1.04–1.09)

1.06 (1.04–1.08)

1.1 × 10⁻⁸

FHIT

rs6803008

chr3:71433554..71679148

T

0.94 (0.90–0.99)

0.95 (0.93–0.97)

0.94 (0.93–0.96)

1.3 × 10⁻⁸

FOXP1 MIR1284

rs2828478

chr21:25092482..25219939

A

1.07 (1.02–1.12)

1.06 (1.04–1.08)

1.06 (1.04–1.08)

1.6 × 10⁻⁸

None

rs9879311

chr3:10317432..10520739

T

1.08 (1.03–1.13)

1.05 (1.03–1.08)

1.06 (1.04–1.08)

1.9 × 10⁻⁸

ATP2B2 GHRL GHRLOS LINC00852 MIR378B MIR885 SEC13 TATDN2

rs73416724

chr6:43234901..43411659

A

1.11 (1.03–1.20)

1.09 (1.05–1.13)

1.09 (1.06–1.13)

3.0 × 10⁻⁸

ABCC10 CRIP3 MIR6780B SLC22A7 TTBK1 ZNF318

rs61847307

chr10:53935082..54035437

T

0.95 (0.90–1.00)

0.94 (0.92–0.96)

0.94 (0.92–0.96)

3.1 × 10⁻⁸

PRKG1

rs7122181

chr11:81178475..81209569

A

0.95 (0.91–1.00)

0.95 (0.93–0.97)

0.95 (0.93–0.97)

3.7 × 10⁻⁸

None

rs880446

chr20:62113220..62178105

A

1.07 (1.02–1.13)

1.06 (1.04–1.09)

1.06 (1.04–1.09)

4.4 × 10⁻⁸

EEF1A2 PPDPF PTK6 SRMS

rs7521492

chr1:163581663..163790947

A

1.05 (1.00–1.10)

1.06 (1.03–1.08)

1.06 (1.04–1.08)

4.7 × 10⁻⁸

None

rs72986630

chr19:11849736..11943697

T

1.07 (0.95–1.21)

1.16 (1.10–1.22)

1.14 (1.09–1.20)

4.7 × 10⁻⁸

ZNF440 ZNF441 ZNF491 ZNF823

rs4904167

chr14:84628384..84701798

T

1.08 (1.03–1.14)

1.05 (1.03–1.07)

1.06 (1.04–1.08)

4.9 × 10⁻⁸

None