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Table 1 Top five SNPs from tier 1 analysis: unique to chromosome X in regions that escape X-inactivation

From: The female protective effect in autism spectrum disorder is not mediated by a single genetic locus

  AGRE discovery (208 cases, 151 controls) SSC replication (207 cases, 676 controls)
SNP Allele 1/allele 2 Affected allele 1 frequency (%) Unaffected allele 1 frequency (%) Odds ratio P value Corrected P value Affected allele 1 frequency (%) Unaffected allele 1 frequency (%) Odds ratio P value
Predicted . 97.0 <24.3 >88 ≤1×10−8 ≤0.05 97.0 <24.3 >88 ≤1×10−8
rs5913021 G/A 71.5 57.3 1.25 0.005 1.0 . . . .
rs5913336 A/G 49.0 63.6 0.77 0.006 1.0 69.6 60.9 1.14 0.007
rs5912329 A/G 71.4 58.2 1.23 0.01 1.0 . . . .
rs1395790 G/A 2.4 7.9 0.30 0.01 1.0 . . . .
rs6624177 A/G 60.0 72.2 0.83 0.02 1.0 . . . .