Table 1 A list of CNV calls encompassing >10 SNPs in the pedigree

chr1:193577075-193861997

44

284,923

del

10

rs1359381

rs12745696

Offspring

chr1:193577075-193861997

44

284,923

del

4

rs1359381

rs12745696

Offspring

chr1:193577075-193861997

44

284,923

del

2

rs1359381

rs12745696

Father

chr13:26048387-26099109

10

50,723

dup

7

rs2133814

rs7986966

Offspring

chr13:26048387-26099109

10

50,723

dup

10

rs2133814

rs7986966

Offspring

chr13:26048387-26099109

10

50,723

dup

6

rs2133814

rs7986966

Offspring

chr13:26048387-26099109

10

50,723

dup

8

rs2133814

rs7986966

Offspring

chr13:26048387-26099109

10

50,723

dup

1

rs2133814

rs7986966

Mother

chr2:41082092-41099005

11

16,914

del

6

rs12474136

rs2373974

Offspring

chr2:41082092-41099005

11

16,914

del

8

rs12474136

rs2373974

Offspring

chr2:41082092-41099005

11

16,914

del

3

rs12474136

rs2373974

Offspring

chr2:41082092-41099005

11

16,914

del

2

rs12474136

rs2373974

Father

chr8:3753745-3763223

14

9,479

del

5

rs2930372

rs1464619

Offspring

chr8:3753745-3763223

14

9,479

del

7

rs2930372

rs1464619

Offspring

chr8:3753745-3763223

14

9,479

del

4

rs2930372

rs1464619

Offspring

chr8:3753745-3763223

14

9,479

del

6

rs2930372

rs1464619

Offspring

chr8:3753745-3763223

14

9,479

del

8

rs2930372

rs1464619

Offspring

chr8:3753745-3763223

14

9,479

del

3

rs2930372

rs1464619

Offspring

chr8:3753745-3763223

14

9,479

del

1

rs2930372

rs1464619

Mother

chrX:22775615-22833684

14

58,070

del

5

rs7889437

rs5970944

Offspring

chrX:22775615-22833684

14

58,070

del

7

rs7889437

rs5970944

Offspring

chrX:22775615-22833684

14

58,070

del

4

rs7889437

rs5970944

Offspring

chrX:22775615-22833684

14

58,070

del

3

rs7889437

rs5970944

Offspring

chrX:22775615-22833684

14

58,070

del

2

rs7889437

rs5970944

Father