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Table 2 shRNA sequences used for knockdown experiments

From: Transcriptomic analysis of genetically defined autism candidate genes reveals common mechanisms of action

Gene

GenBank accession number

shRNA target sequence

TaqMan assay ID

Mecp2

NM_010788

GCCGATCTGCTGGAAAGTATG

Mm00465017_m1

Mef2a

NM_001033713

GCCCTAATGCTTTGTCGTACA

Mm00488963_m1

Mef2d

NM_133665

GTAGCTCTCTGGTCACTCC

Mm00504929_m1

Nlgn1

NM_138666

GCAGATTGCCTGAAGTTATGC

Mm02344307_m1

Nlgn3

NM_172932

GGATATGGTGGATTGTCTTCG

Mm01225953_m1

Pten

NM_008960

GGACAAGTTCATGTACTTTGA

Mm00477210_m1

Shank3

NM_021423

GGGAGAAGTTGGATGAGATCC

Mm00498775_m1

Gapdh

NM_008084

Not Applicable

4352339E

Luciferase (pGL3-Basic)

U47295

AATTCAGCGGGAGCCACCTGA

Not Applicable