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Table 1 Most significant immune loci from the association analyses

From: Immune function genes CD99L2, JARID2 and TPO show association with autism spectrum disorder

SNP

Chr

Pos (Mb)

Region

TDT

PDT

MA

T:U

OR (95% CI)

P-value

P-FDR

P-value

rs7880807I

X

15.006

CD99L2

A

190:299

0.64 (0.53-0.76)

8.26E-07

-

ND

rs13193457*

6

15.346

JARID2

A

139:229

0.61 (0.49-0.75)

2.71E-06

-

6.04E-05

rs11796490

X

150.058

CD99L2

G

239:351

0.68 (0.58-0.80)

4.01E-06

1.53E-02

NA

rs1514687

2

1.438

TPO

A

349:239

1.46 (1.24-1.72)

5.72E-06

1.87E-02

4.49E-06

rs10890518I

2

1.435

TPO

G

356:249

1.43 (1.22-1.62)

1.36E-05

-

ND

  1. Chr, Chromosome; Pos., position; MA, minor allele; T:U, transmitted to untransmitted minor allele counts; OR, odds ratio; CI, confidence interval; P-FDR. False Discovery Rate-adjusted P-value; ND, test not done with imputed data; NA, not applicable, as the PDT does not handle chromosome X data. *This SNP had a 5% Mendelian error rate. IThis SNP was imputed.
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Molecular Autism

ISSN: 2040-2392