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Table 1 Targeted genes and regions (hg18 coordinates)

From: Evidence of novel fine-scale structural variation at autism spectrum disorder candidate loci

Gene/locus

Chr

Start

Stop

GABRD

chr1

1940703

1952050

ALDH9A1

chr1

163898073

163934524

GAD2

chr10

26545600

26633493

GABARAPL1

chr12

10256756

10266991

GABR CLUSTER→GABR-A/B/G

chr15

24339787

25451729

ABAT

chr16

8675928

8785933

GABARAPL2

chr16

74157750

74169280

ZDHHC7

chr16

83565573

83602642

GABARAP

chr17

7084462

7086477

LOC649186

chr19

61520464

61521066

DBI

chr2

119840974

119846592

GAD1

chr2

171381446

171425905

SLC32A1

chr20

36786519

36791429

GABRR3

chr3

99188217

99236521

ZDHHC3

chr3

44941665

44992618

JAKMIP1

chr4

6106385

6253183

GABRG1

chr4

45732544

45820839

GABRA2

chr4

45946463

46087178

GABRA4

chr4

46615674

46690337

GABRB1

chr4

46728336

47123202

SLC6A7

chr5

149549713

149570828

GABRB2

chr5

160648014

160907708

GABRA6

chr5

161045548

161061690

GABRA1

chr5

161206983

161258992

GABRG2

chr5

161427295

161515106

GABRP

chr5

170143343

170173628

ALDH5A1

chr6

24603176

24645414

GABBR1

chr6

29631387

29708839

GABRR1/GABRR2

chr6

89944691

90081673

GABBR2

chr9

100090187

100511300

GABRE

chrX

150872252

150893807

GABRA3

chrX

151087186

151370486

GABRQ

chrX

151557293

151572481

SV2A

chr1

148140546

148159156

SLC12A5

chr20

44091245

44122196

SLC38A3

chr3

50217709

50233408

SLC6A1

chr3

11009456

11055935

SLC6A11

chr3

10832917

10955146

SLC6A12 & SLC6A13

chr12

167240

245958

CHR5 Peak Association Region

chr5

24400928

27150205

CD38

chr4

15389029

15459804

OXT

chr20

3000266

3001162

OXTR

chr3

8767095

8786300

BDNF

chr11

27631325

27707500

EN2

chr7

154943585

154950287

MECP2

chrX

152940458

153016323

SHANK3

chr22

49459936

49518504

MBD1

chr18

46045698

46064286

MBD2

chr18

49916985

50016488

MBD3

chr19

1527678

1543652

MBD4

chr3

130632483

130641542

NRXN1

chr2

49993980

51150855

NRXN2

chr11

64130222

64247236

NRXN3

chr14

77528262

79502905

FOXP2

chr7

113404235

114320494

CNTNAP2

chr7

145444386

147749019

chr16p11.2

chr16

29478715

30278715

NLGN1

chr3

174785171

175483810

NLGN2

chr17

7252226

7263903

NLGN3

chrX

70278940

70308868

NLGN4-Y

chrY

15144026

15464921

NLGN4-X

chrX

5818083

6156706

Positive and negative controls (common polymorphisms)

Deletion/duplication

chr1

109988334

109993086

Deletion/duplication

chr3

99893514

99897268

Deletion

chr3

194260213

194265258

Deletion/duplication

chr10

132799241

132802636

Duplication

chr16

4710525

4715494