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Table 1 Targeted genes and regions (hg18 coordinates)

From: Evidence of novel fine-scale structural variation at autism spectrum disorder candidate loci

Gene/locus Chr Start Stop
GABRD chr1 1940703 1952050
ALDH9A1 chr1 163898073 163934524
GAD2 chr10 26545600 26633493
GABARAPL1 chr12 10256756 10266991
GABR CLUSTER→GABR-A/B/G chr15 24339787 25451729
ABAT chr16 8675928 8785933
GABARAPL2 chr16 74157750 74169280
ZDHHC7 chr16 83565573 83602642
GABARAP chr17 7084462 7086477
LOC649186 chr19 61520464 61521066
DBI chr2 119840974 119846592
GAD1 chr2 171381446 171425905
SLC32A1 chr20 36786519 36791429
GABRR3 chr3 99188217 99236521
ZDHHC3 chr3 44941665 44992618
JAKMIP1 chr4 6106385 6253183
GABRG1 chr4 45732544 45820839
GABRA2 chr4 45946463 46087178
GABRA4 chr4 46615674 46690337
GABRB1 chr4 46728336 47123202
SLC6A7 chr5 149549713 149570828
GABRB2 chr5 160648014 160907708
GABRA6 chr5 161045548 161061690
GABRA1 chr5 161206983 161258992
GABRG2 chr5 161427295 161515106
GABRP chr5 170143343 170173628
ALDH5A1 chr6 24603176 24645414
GABBR1 chr6 29631387 29708839
GABRR1/GABRR2 chr6 89944691 90081673
GABBR2 chr9 100090187 100511300
GABRE chrX 150872252 150893807
GABRA3 chrX 151087186 151370486
GABRQ chrX 151557293 151572481
SV2A chr1 148140546 148159156
SLC12A5 chr20 44091245 44122196
SLC38A3 chr3 50217709 50233408
SLC6A1 chr3 11009456 11055935
SLC6A11 chr3 10832917 10955146
SLC6A12 & SLC6A13 chr12 167240 245958
CHR5 Peak Association Region chr5 24400928 27150205
CD38 chr4 15389029 15459804
OXT chr20 3000266 3001162
OXTR chr3 8767095 8786300
BDNF chr11 27631325 27707500
EN2 chr7 154943585 154950287
MECP2 chrX 152940458 153016323
SHANK3 chr22 49459936 49518504
MBD1 chr18 46045698 46064286
MBD2 chr18 49916985 50016488
MBD3 chr19 1527678 1543652
MBD4 chr3 130632483 130641542
NRXN1 chr2 49993980 51150855
NRXN2 chr11 64130222 64247236
NRXN3 chr14 77528262 79502905
FOXP2 chr7 113404235 114320494
CNTNAP2 chr7 145444386 147749019
chr16p11.2 chr16 29478715 30278715
NLGN1 chr3 174785171 175483810
NLGN2 chr17 7252226 7263903
NLGN3 chrX 70278940 70308868
NLGN4-Y chrY 15144026 15464921
NLGN4-X chrX 5818083 6156706
Positive and negative controls (common polymorphisms)
Deletion/duplication chr1 109988334 109993086
Deletion/duplication chr3 99893514 99897268
Deletion chr3 194260213 194265258
Deletion/duplication chr10 132799241 132802636
Duplication chr16 4710525 4715494