From: Evidence of novel fine-scale structural variation at autism spectrum disorder candidate loci
Gene/locus | Chr | Start | Stop |
---|---|---|---|
GABRD | chr1 | 1940703 | 1952050 |
ALDH9A1 | chr1 | 163898073 | 163934524 |
GAD2 | chr10 | 26545600 | 26633493 |
GABARAPL1 | chr12 | 10256756 | 10266991 |
GABR CLUSTER→GABR-A/B/G | chr15 | 24339787 | 25451729 |
ABAT | chr16 | 8675928 | 8785933 |
GABARAPL2 | chr16 | 74157750 | 74169280 |
ZDHHC7 | chr16 | 83565573 | 83602642 |
GABARAP | chr17 | 7084462 | 7086477 |
LOC649186 | chr19 | 61520464 | 61521066 |
DBI | chr2 | 119840974 | 119846592 |
GAD1 | chr2 | 171381446 | 171425905 |
SLC32A1 | chr20 | 36786519 | 36791429 |
GABRR3 | chr3 | 99188217 | 99236521 |
ZDHHC3 | chr3 | 44941665 | 44992618 |
JAKMIP1 | chr4 | 6106385 | 6253183 |
GABRG1 | chr4 | 45732544 | 45820839 |
GABRA2 | chr4 | 45946463 | 46087178 |
GABRA4 | chr4 | 46615674 | 46690337 |
GABRB1 | chr4 | 46728336 | 47123202 |
SLC6A7 | chr5 | 149549713 | 149570828 |
GABRB2 | chr5 | 160648014 | 160907708 |
GABRA6 | chr5 | 161045548 | 161061690 |
GABRA1 | chr5 | 161206983 | 161258992 |
GABRG2 | chr5 | 161427295 | 161515106 |
GABRP | chr5 | 170143343 | 170173628 |
ALDH5A1 | chr6 | 24603176 | 24645414 |
GABBR1 | chr6 | 29631387 | 29708839 |
GABRR1/GABRR2 | chr6 | 89944691 | 90081673 |
GABBR2 | chr9 | 100090187 | 100511300 |
GABRE | chrX | 150872252 | 150893807 |
GABRA3 | chrX | 151087186 | 151370486 |
GABRQ | chrX | 151557293 | 151572481 |
SV2A | chr1 | 148140546 | 148159156 |
SLC12A5 | chr20 | 44091245 | 44122196 |
SLC38A3 | chr3 | 50217709 | 50233408 |
SLC6A1 | chr3 | 11009456 | 11055935 |
SLC6A11 | chr3 | 10832917 | 10955146 |
SLC6A12 & SLC6A13 | chr12 | 167240 | 245958 |
CHR5 Peak Association Region | chr5 | 24400928 | 27150205 |
CD38 | chr4 | 15389029 | 15459804 |
OXT | chr20 | 3000266 | 3001162 |
OXTR | chr3 | 8767095 | 8786300 |
BDNF | chr11 | 27631325 | 27707500 |
EN2 | chr7 | 154943585 | 154950287 |
MECP2 | chrX | 152940458 | 153016323 |
SHANK3 | chr22 | 49459936 | 49518504 |
MBD1 | chr18 | 46045698 | 46064286 |
MBD2 | chr18 | 49916985 | 50016488 |
MBD3 | chr19 | 1527678 | 1543652 |
MBD4 | chr3 | 130632483 | 130641542 |
NRXN1 | chr2 | 49993980 | 51150855 |
NRXN2 | chr11 | 64130222 | 64247236 |
NRXN3 | chr14 | 77528262 | 79502905 |
FOXP2 | chr7 | 113404235 | 114320494 |
CNTNAP2 | chr7 | 145444386 | 147749019 |
chr16p11.2 | chr16 | 29478715 | 30278715 |
NLGN1 | chr3 | 174785171 | 175483810 |
NLGN2 | chr17 | 7252226 | 7263903 |
NLGN3 | chrX | 70278940 | 70308868 |
NLGN4-Y | chrY | 15144026 | 15464921 |
NLGN4-X | chrX | 5818083 | 6156706 |
Positive and negative controls (common polymorphisms) | |||
Deletion/duplication | chr1 | 109988334 | 109993086 |
Deletion/duplication | chr3 | 99893514 | 99897268 |
Deletion | chr3 | 194260213 | 194265258 |
Deletion/duplication | chr10 | 132799241 | 132802636 |
Duplication | chr16 | 4710525 | 4715494 |